MmuINT0143125 @ mm10
Intron Retention
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30348555-30350380:-
Coord C1 exon
chr2:30350288-30350380
Coord A exon
chr2:30348618-30350287
Coord C2 exon
chr2:30348555-30348617
Length
1670 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TGAACTCTGTTCCCTGCCAGACG
3' ss Score
7.41
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTGCAGAACCGGCGTCTTGACCTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCAGCCGAAGCCAAAGCCACG
Seq A exon
GTAAGTACTCCTGCCCCTCCTTGCTTCCAGGCACTGGGGTGGAGTGTGCAGGGACCTGGTGTTTAGCATGCTCTTCCTCCTTGGCTGGGGCTAGACTGCGCTGCCTGGTCAGGTCATGGTCTCTGTCCCCACCCCAGGGAACTCTAGTGGCTCTAGACAGACATGTATGAGGTGGGCAGACTCACAGTGCCTGTAACTGGGCTGGGCACTCTGCAAGCCTCTAGGACATTAGATGGAATTCTTGCATGCCTTTCCTGCCTCCATGGGTGCTCAGCCTGTCCCTGCCTGGGCATGGCTCCCTCACTAACTCTCCACCTGCTGCTTGAACATGGGGTACACAGTGCCCTATGCTTAGATTCCCCTAGGCTGTGGAGAGCACTAGAGCTGGCCAGCCCCCATAGCCCACACAGGCCTGGGCCGGCCTGCTTCTCCTACACCAACCAGGATGGGACAGGTTGCATCAGAAGGGTCAGGCACTGTCTTGGTATGCAGGCTGCTTAAGGGTGTAAGGGATCTAACAGCCAACATGGGTCCTGAGAAGGAAAGTCCTAGACCCAGGGTCTGTTAGGGAAACTCCTATGCCTCTCAGCCTCTCAGCTGAAGAAAGGTGGGCCAGGCTAGGCGAGCCTGCTGGGCTCTCCACTGCCTGTAACTCGCCACCATTCTACCCTTCCTCCCTACAGCATGGTCACTGTGCTCACTGGGGCTGACACTGCCTCTGGCGAGAGCCATAACAGGGTCCCGGGTCACCAGTGTGCTTCGTCCATATGTGAAGAGAGTATGGCTCTTGGGATCACTTGTGCAGAGCAGCCCCACTCCCTGTCACACTCCCTGTCACTTTTGCCTCTCCTTAGTCACTGCAGGGTAACCGCTTCCCCTTGGGGCCCAGAGGGCCTTGGGCCTGTGAGTCACATGAGGTATGAGCAGTGTCCCTAGGGCCTGCTCCCCAGGACTCCTGAGGGGTCTGGCTGTGCCTGCTCCCCCTGCTGTGGACTTACTAACTCTCTTGTTTTTGTTCCTTTCCCTTCTGCTTTGGGTAACTTGGCTCAGTGTGAGGGCGATGTGAGTATACCCGTCCCATGTGCTGTGCTGCTTCCAGTTCGCCCATCCCGCCCGAGGGCCCAGGTGCTGCGGCCAGCCCAGGGCATGCCCTCGGGTTTTTGCAATTGGCTGCAGAGTCTCTGGTTTGTGGGGATGCAGGCATTGGCCTGTGAGGCAGCTTCTTGCAAATGTTAAAAGCCTGTCACTGTCCACCCATGCATCCATCTATCTACTCTTGTGGGGAGGGATCTGGCCTTGACGGAGGAGCCAGAAACAGCGTGGTGAAGTTCTGAGCTGGAGAGAGCTGTGGTGGGGAGGGCTGCGCACCTGTTGGGCCTCTCTGTGTGCCTGAGACCCAGAAGAGGGGCAGGCCTAGCCTGTGGGTTCCTTGGGCTCCCAGCACATCTGTCCAATGGATCTTCAATTTGGACCCATTGAGCCCCTAAGCCCGTCTCATCTCCAGCTGGCTGGAGTGGGCAGAGGGTCTGTGTTGTATCTGTCTTTCCTCTTGTCCCAGGGGCCAGGGTTTCTTGCATCTCCTTATAGGAGACCCTGGGGCCACCTCCTGGCCTCAACACTGGTCCTGGCCCAGGGTGACCCCTCTCCCCATGAACTCTGTTCCCTGCCAG
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860:ENSMUST00000028214:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100),PF0313112=bZIP_Maf=FE(34.1=100)
A:
NA
C2:
PF0311413=BAR=PD(4.1=38.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types