HsaINT0149370 @ hg19
Intron Retention
Gene
ENSG00000148341 | SH3GLB2
Description
SH3-domain GRB2-like endophilin B2 [Source:HGNC Symbol;Acc:10834]
Coordinates
chr9:131774515-131776782:-
Coord C1 exon
chr9:131776690-131776782
Coord A exon
chr9:131774578-131776689
Coord C2 exon
chr9:131774515-131774577
Length
2112 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TGAACTCTGTTCCCCGCCAGACG
3' ss Score
7.2
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTCCAAAACCGGCGTCTGGACTTGGATGCCTGCAAAGCGAGGCTGAAGAAGGCCAAGGCTGCAGAAGCCAAAGCCACG
Seq A exon
GTAGGTGTCCCCGCTCCCCGCTGGCCTCCTGGCCCAGGCTCTGGCTGGAGCCAAGGGGTGGTGGCATGAAGGGACCTGGTATTTGGCATGACCTCTCTCCCCTCTCCCTGGCTGGAGATGCCTGGCTGGGGGCTGCTGGGCTGAGCCTCTCTGTCCCTGCCCTCAAGGGAGCCTTGGTGGCCCCCGAGCTCTGGTTCCCAGGGAGATATCTACGGTGTGGGCGGACCAGCAGTGCCCCCAGCTGGGTGCACCACCCCGCCAGGCAGCTGGAGTCTCCTGCATGCCCTGCCCTGCCCTCCTAGATGCTCGGCTCTGTCCCCGGCTCTGCCCGGGCATGGCACCTTCTTACTAACTCTACTACTTGCTGCTTGAACGTCAGGCCGAGGGTCCCTGTGCTCAGGCGCCCCCACGATGGTGTGGAAAACCTGGGAGCTGGACCGCCCGCTTGCTCAGGGCCGTGTCCGAGGGGTCCCATGAGATTGGATAGGGCCTGGGCCATCTGGCGCCCCCTTCACTCCCAGCTCACTGAGGCCTGTTCAGCCTGGCTGGGTCAATGGGACGCAGCCTGGGACAGTGTGCCCAGGGCGAGGCCAGGATTGGAGGAGCTGGGCCCAAGGGTGAACACCCTCCTGGCACAAGAGGTTGCTCAGGGCTGCCAGGCCTAAAGGCTGCCTCATACCTTGCAGAGGGAACTCCCAGGCCCAGGCCTACTAGGGAGATGGCTACCTGTGGCTGCCAGCTGATTAGCCGAGGGAGGCCAGGCCTAGCCTGGGCTCACAGCTGCCCATGCACCTTGCGTTCCCCTCCCATAGTGTGGCCCCAGAGCCAGCACTGCCCCTGGCGAGAACCGTCTCAGGTCACTCAAGTGTGTGGGGTCTAGATCAGAGGCAGGGGTGTAGTTGTTTCAATCTTGGGGTTGGCTAGGGTGACCTGTGCCTATTGGGATGACCTCTTCTAAGGCACCTGAACAGGACAGTCTCCCCCGTCACTTCGGGCCAGACACCGTCTCTGGAGTAACTCAGCCAGAACACACTCTCTCCATCAGCCAGGCCAGAGGAGCCTTTCCTGTCATTGCAGTGGTGTGGCCTCTCCCTCACCTGGTGGGCCTGGACAACCTCACATCCTGGGGTTGGGCCAGGCCACCTTTCCAGAGCTAGGACTTGGGCAGCCCCAGGAACAGCATTCCAGAGGACTCAAGCTCCACAGCTCTGTCCCCATAAGCACGCACACGTTAGGACTCTTCAGGAGGGCAGGCTGTGGTGCCTCCCTCCGCCCGACCGCCTGGTGTCCCCTCCCACTGGGGCCTGGGGGGCCTGCTCCTGCCTGCGCTGTGGACTCACTAACTCTTTGTTTTTGTTCCTTTCCGTCCTGCTTTGGGTAACTTGGCTCAGTGTGAGGGAGATGTGAGTATACCTGTCCCACGCGCTGTGCTGCTTCCGGTCTGCCCATCTTGCCCGTGGACCCACGGTGCCATGGCCAGCCCACGTCCTTGGGGCATTTTGCAAGCAGCTGGTCTCCCCGCCAGAGCCTCTACTGTGCAGGGCCTCTGGTTTAGGGGGGGATGCCAGGCGTTGGGGCCTGTGAGTCAGCTTTTTGCAAATGTTGGACGCCTGTCACTCTGTCTGCCCATGCATCCATCTGTCCACCTTCATTGTCGGGAGGGGCCTGGCCCTTGATGCAGGAGCAAGAGATGTGGTGTGCGGATTCTGGGATGGAAAAAGCCATCCCAGTTGGGGGTGGGCTGTGTTTGCGGGACCCTGGGGCATCTGAGTGCCACTGGTCTGGGGAGGAGGGGGCTGTGGCCCCTGGCAGGGGAGAGCCCAGCCTGTGACTTGCTCAGGCAGCCTCGGCCATCTCCTCACCGCATTTGCTCTCCTGAGCTCCAGTGCCTGCAGCCACTTGATCTTTGTCTGGACTCTCCAAGTCCCTAGGCCCCTCATCTCCAGGTGGTTGGAGTCGGGAGAAGGGGGTTTGTGTTGTGTTTGTATCCCCGTCCCTGGGGTCAGGCCTCTTGGCATCTCCTTGTGCAAGACTCTGGGGTAGCCTCCTGACCTCGACCCTGGCCCTGGCCCAGGGTGACCCCCTCCCCACATGAACTCTGTTCCCCGCCAG
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-SH3GLB2:NM_020145:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100),PF0313112=bZIP_Maf=FE(33.3=100)
A:
NA
C2:
PF0311413=BAR=FE(7.1=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)