RnoINT0134724 @ rn6
Intron Retention
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8912901-8913599:-
Coord C1 exon
chr3:8913588-8913599
Coord A exon
chr3:8912964-8913587
Coord C2 exon
chr3:8912901-8912963
Length
624 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TGAACTCTGTTCCCCGCCAGACG
3' ss Score
7.2
Exon sequences
Seq C1 exon
TGTGAGGGAGAT
Seq A exon
GTGAGTATACCAGCCCCATGTGCTGTGCTGCTTCCGGTTCGCTCACCCTGCCCGAGGGCCCAGGTGCTGCGGCCAGCCCAGGGCATGCCTTCAGGCTTTTGCAATTGGCTGACCTCCATGCAGAGCCTCTGGTTTGTGGGGATGCAGGCATTGGCCTGGGAGGCAGCTTCTTGCAAACGTTAAAAGCCTGCCTGTCACTCTGTCCATCCATGCATCCATCTATCCACTCTTGTGGGGAGGGATCTGGCCCTGGTGGAGGAGCCACAAACAATGTGGTGAAGTTCTGAGCTGGAGGAAGCCATGGTGGGGAGGGCCGTGGATCTGTTGGGACTCCTTGTGTGCCAAAGACCTGGAAGAAGGGCAGGCCTAGCCTGTGGGTTACTTGGGCTCCTCACACATCTGCCCATTGAGTCTTCAGTTCCGACCCACTGGACCCCTAAGCCTGTCTCATCTCCATCGGGCTGGAGTGGGCAGAGGGTCTGTGTTGTGTCTGTCTTTCTTCTTGTCCCAGGGGCCAGGGTTCCTTGCATCTCCTTATAGGAGACCCTGGGGCCACCTCCAGGCCTCAACATTGGTCCTGGCCCAGGGTGACCCCTCTCCCCCATGAACTCTGTTCCCCGCCAG
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295:ENSRNOT00000023527:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(1.6=100)
A:
NA
C2:
PF0311413=BAR=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]