HsaINT0149370 @ hg38
Intron Retention
Gene
ENSG00000148341 | SH3GLB2
Description
SH3 domain containing GRB2 like endophilin B2 [Source:HGNC Symbol;Acc:HGNC:10834]
Coordinates
chr9:129012236-129014503:-
Coord C1 exon
chr9:129014411-129014503
Coord A exon
chr9:129012299-129014410
Coord C2 exon
chr9:129012236-129012298
Length
2112 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TGAACTCTGTTCCCCGCCAGACG
3' ss Score
7.2
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTCCAAAACCGGCGTCTGGACTTGGATGCCTGCAAAGCGAGGCTGAAGAAGGCCAAGGCTGCAGAAGCCAAAGCCACG
Seq A exon
GTAGGTGTCCCCGCTCCCCGCTGGCCTCCTGGCCCAGGCTCTGGCTGGAGCCAAGGGGTGGTGGCATGAAGGGACCTGGTATTTGGCATGACCTCTCTCCCCTCTCCCTGGCTGGAGATGCCTGGCTGGGGGCTGCTGGGCTGAGCCTCTCTGTCCCTGCCCTCAAGGGAGCCTTGGTGGCCCCCGAGCTCTGGTTCCCAGGGAGATATCTACGGTGTGGGCGGACCAGCAGTGCCCCCAGCTGGGTGCACCACCCCGCCAGGCAGCTGGAGTCTCCTGCATGCCCTGCCCTGCCCTCCTAGATGCTCGGCTCTGTCCCCGGCTCTGCCCGGGCATGGCACCTTCTTACTAACTCTACTACTTGCTGCTTGAACGTCAGGCCGAGGGTCCCTGTGCTCAGGCGCCCCCACGATGGTGTGGAAAACCTGGGAGCTGGACCGCCCGCTTGCTCAGGGCCGTGTCCGAGGGGTCCCATGAGATTGGATAGGGCCTGGGCCATCTGGCGCCCCCTTCACTCCCAGCTCACTGAGGCCTGTTCAGCCTGGCTGGGTCAATGGGACGCAGCCTGGGACAGTGTGCCCAGGGCGAGGCCAGGATTGGAGGAGCTGGGCCCAAGGGTGAACACCCTCCTGGCACAAGAGGTTGCTCAGGGCTGCCAGGCCTAAAGGCTGCCTCATACCTTGCAGAGGGAACTCCCAGGCCCAGGCCTACTAGGGAGATGGCTACCTGTGGCTGCCAGCTGATTAGCCGAGGGAGGCCAGGCCTAGCCTGGGCTCACAGCTGCCCATGCACCTTGCGTTCCCCTCCCATAGTGTGGCCCCAGAGCCAGCACTGCCCCTGGCGAGAACCGTCTCAGGTCACTCAAGTGTGTGGGGTCTAGATCAGAGGCAGGGGTGTAGTTGTTTCAATCTTGGGGTTGGCTAGGGTGACCTGTGCCTATTGGGATGACCTCTTCTAAGGCACCTGAACAGGACAGTCTCCCCCGTCACTTCGGGCCAGACACCGTCTCTGGAGTAACTCAGCCAGAACACACTCTCTCCATCAGCCAGGCCAGAGGAGCCTTTCCTGTCATTGCAGTGGTGTGGCCTCTCCCTCACCTGGTGGGCCTGGACAACCTCACATCCTGGGGTTGGGCCAGGCCACCTTTCCAGAGCTAGGACTTGGGCAGCCCCAGGAACAGCATTCCAGAGGACTCAAGCTCCACAGCTCTGTCCCCATAAGCACGCACACGTTAGGACTCTTCAGGAGGGCAGGCTGTGGTGCCTCCCTCCGCCCGACCGCCTGGTGTCCCCTCCCACTGGGGCCTGGGGGGCCTGCTCCTGCCTGCGCTGTGGACTCACTAACTCTTTGTTTTTGTTCCTTTCCGTCCTGCTTTGGGTAACTTGGCTCAGTGTGAGGGAGATGTGAGTATACCTGTCCCACGCGCTGTGCTGCTTCCGGTCTGCCCATCTTGCCCGTGGACCCACGGTGCCATGGCCAGCCCACGTCCTTGGGGCATTTTGCAAGCAGCTGGTCTCCCCGCCAGAGCCTCTACTGTGCAGGGCCTCTGGTTTAGGGGGGGATGCCAGGCGTTGGGGCCTGTGAGTCAGCTTTTTGCAAATGTTGGACGCCTGTCACTCTGTCTGCCCATGCATCCATCTGTCCACCTTCATTGTCGGGAGGGGCCTGGCCCTTGATGCAGGAGCAAGAGATGTGGTGTGCGGATTCTGGGATGGAAAAAGCCATCCCAGTTGGGGGTGGGCTGTGTTTGCGGGACCCTGGGGCATCTGAGTGCCACTGGTCTGGGGAGGAGGGGGCTGTGGCCCCTGGCAGGGGAGAGCCCAGCCTGTGACTTGCTCAGGCAGCCTCGGCCATCTCCTCACCGCATTTGCTCTCCTGAGCTCCAGTGCCTGCAGCCACTTGATCTTTGTCTGGACTCTCCAAGTCCCTAGGCCCCTCATCTCCAGGTGGTTGGAGTCGGGAGAAGGGGGTTTGTGTTGTGTTTGTATCCCCGTCCCTGGGGTCAGGCCTCTTGGCATCTCCTTGTGCAAGACTCTGGGGTAGCCTCCTGACCTCGACCCTGGCCCTGGCCCAGGGTGACCCCCTCCCCACATGAACTCTGTTCCCCGCCAG
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341:ENST00000372564:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100),PF0313112=bZIP_Maf=FE(33.3=100)
A:
NA
C2:
PF0311413=BAR=FE(7.1=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains