BtaINT0132583 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99511478-99513771:-
Coord C1 exon
chr11:99513679-99513771
Coord A exon
chr11:99511541-99513678
Coord C2 exon
chr11:99511478-99511540
Length
2138 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TGAACTCTGTTCCCCGCCAGACG
3' ss Score
7.2
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTGCAGAACCGGCGTCTAGACCTGGATGCCTCCAAAGCGCGGCTCAAGAAGGCCAAGGCTGCCGAAGCCAAAGCCACG
Seq A exon
GTAGGTGTCCTGCTGGACCAGAGCGGGTGGAGGCTCGGGGTGGAGGCTCGTGATGTTTGGCATGACCTCCCTCCCCGTCAAAGCCTGGCTGGGGGGCACTGCTCGGGGCAGACCACGTCAGGTCACGCCCGTCTGCTCCCACCCCCAATGGAACCCTGCTGACCCAGAGCTCTGGGTTCCCAGGGCAGACACTGGGTCTGGGGGCGGGTGGTGGGTAGACCCACAGCGCCCTCACCTGAGCTCAGGGCAGCCTGCAGCCTCCCCAGATAGACAGCCGGTTGGCTTCTCGCATGCCCCCCGTGCTGCCCTCCCTGGACGCTCAGCTCTGTTCCCGGCTCTGCCCGGGCATGGCTCCGCTACTAACCGCGCCCCCCTTCCCCGCCGCTCCAGTGCTGTTCCCCGGGCGCCCCGTCCTGTCCTCAGGCTCCATTGCGCTGGTGTGGAGGTCCCAGAGCTGGGCTGCTCACCTGCCCAGGGGCAGGTCTCGGGGCCCTTCAGGGAGCCCCACGTCGCTGAATGGAGCCAGGGCTATCTTGGCTCCCCTTCTGCTCAGCCAGGCCGATGGGATGCAGCGTGGCACATGGTGACCAGGGCGAGGCCAGGGTTTGGGAGAGCTGGGCCCCAGGGGCCTGGGCTGCTTGGGGTGCAGGGGCTGCAAGGCCGCCTCACACCCCGGGGTGGGAACTCCCCCAGTCAGGTCCGGGACACCAGGGACACTGGCACCTGCGCCCGGCGGGGCCCTTGGCCAGGGAAGGCCAGGTGCCCCCGCTGCCCGAGAGTTAGTTACAGCCCCCAACCCTCCTCGCATTGCCCTCCCTTTGTGTGGCCCCTGGGGGCCACGGAGTCTGGGCGGTGCCCCTGGCAAGAGCCGTGGCACCTCGTCCAGGTGTGTGGAGTCCAGACCAGAGGCAGGGCCTCAGCCAGCGGCGTCGGGTTGGGCTTGGGTAGGCTGCCTGAGCCCCCCTGGACTGGACAGGCTCCCCGCCCTCAGGGCCGGGCAGCTCTCTGGAGTCCCTTGGCCAGGATAGGCCTTCCTCTGTCCGCCAGGCCGGGGAGCGCTTCCTTCGTCACCAGGGCGGCACAACCTCCCATCCGGCTGGTTGGCCCAGACCAGCCCCGAGTGTGTGGCTTTTTAGCAGGATATCCCCTCCCAAGCGGGGCCCTGGTACAGCATCCCAGCGGGCTCCAGCCCAGCAGGGCACCCCCAGCCCACCCGCCACCCCTCAGTAGCCACACTGGTCAGGACTCCTTCCGGAGGGCGGGCTTGTGCGTCCCCGGGGGGCCTGCTCCCGCCTGCGCTGTGGACTCACTAACTCTTTGTTTTTGTTCCTTGCCGTTCTGCTTTGGGTAACTTGGCTCAGTGTGAGGGAGATGTGAGTATACCTGTCCCACGTGCTGTGCCGCTTCTGGTTTGCCCACCTCGGCCTTGGGCCCCGCGGGGCCGGGCCGGGCTGGGCCAGCCGGGCCGGGGAGGGCCGTCCTCCGGGCCTTTTGCAAAGCAGCTGGTCTCCCACCGGGGCCTCCACCACGTGTAGCCTCTGGTCTGGGGGGACGCCAGGCGTTGGAGCCTGTTGAGTCAGCTTTTTGCAAATGTCAACCGCCTGTCACTCTGTCCATCCATGCATCCATCTGTCCACCCTTGTGGCGGGGGAGGGGCCCAGTTCTTGCTGCAGGAAGGAGAGATGATTGGGTGTGTGCAGAGGTGTGGATGGAGCGAGCCGGGTAGGGTGGGGGTGGGCTCTGCTTGGAGAACGGTGGGTCTAATGGGCTTCTGAGTGAGACGAGGCTGGCCTGGGGAAGAGAGACCTGAGGACCGCCGGGGCCAGGCGGGTCTGCGTCCTGCCCGAGGTTCCGGGCTGTCCCCTCGTCGGCATCTGCTCTCCTGGGCTCCCCAGCGTGTCCACCCTCCTGGTCTTTGTCCCGACCCTCGGAGACCCTCACTCATCCTGCCTCCTGTGCAGGTGGTTGGCGTGGGGAGAATGGGGTCTGTGTTGTTATCTGTCCGTACCCTCCTGTCCATGGGGTTGGGGTGGGGGGTGCTCCTGGCATCTCCCTGGGGGAGACTCTAGGGCGGCCTCCTGGCCTGGCCCCTGCGCCACGTGACTCCCCCCTCCCCCATGAACTCTGTTCCCCGCCAG
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626:ENSBTAT00000014049:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
NA
C2:
PF0311413=BAR=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development