GgaEX0006092 @ galGal4
Exon Skipping
Gene
ENSGALG00000004512 | SH3GLB2
Description
Endophilin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJ81]
Coordinates
chr17:5438834-5447056:-
Coord C1 exon
chr17:5446964-5447056
Coord A exon
chr17:5443211-5443273
Coord C2 exon
chr17:5438834-5438857
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACTCTATTCCCCCTATTAGGCT
3' ss Score
6.34
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
AAAGAGCGGAGGATCCTGCAGAACCGCCGCCTGGATCTGGATGCCTGCAAAGCAAGGTTGAAGAAAGCCAAAGCTGCAGAAGCAAAAGCAGCG
Seq A exon
GCTGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACGTTCTCTCCGCCAGCGCATCAGCG
Seq C2 exon
CTTTGGAGCGACGAGGTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512-'9-17,'9-10,11-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.022 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(7.3=100)
C2:
PF0311413=BAR=FE(2.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGCGGAGGATCCTGCAG
R:
TTTTCCACCTCGTCGCTCCAA
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]