GgaEX0006093 @ galGal4
Exon Skipping
Gene
ENSGALG00000004512 | SH3GLB2
Description
Endophilin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJ81]
Coordinates
chr17:5436521-5443273:-
Coord C1 exon
chr17:5443211-5443273
Coord A exon
chr17:5438834-5438857
Coord C2 exon
chr17:5436521-5436610
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTGTGGTCCCCACAGCTT
3' ss Score
9.23
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACGTTCTCTCCGCCAGCGCATCAGCG
Seq A exon
CTTTGGAGCGACGAGGTGGAAAAA
Seq C2 exon
GCAGAGCACGAGCTGCGGCTCACTCAGACCGAGTTTGATCGGCAGGCAGAGGTGACACGTCTGCTGCTGGAGGGGATCAGCAGCACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512-'11-20,'11-17,12-20
Average complexity
C1
Mappability confidence:
100%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(7.3=100)
A:
PF0311413=BAR=FE(2.5=100)
C2:
PF0311413=BAR=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACGTTCTCTCCGCCAGC
R:
GATCCCCTCCAGCAGCAGA
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]