HsaEX0058025 @ hg38
Exon Skipping
Gene
ENSG00000148341 | SH3GLB2
Description
SH3 domain containing GRB2 like endophilin B2 [Source:HGNC Symbol;Acc:HGNC:10834]
Coordinates
chr9:129010120-129012298:-
Coord C1 exon
chr9:129012236-129012298
Coord A exon
chr9:129010670-129010693
Coord C2 exon
chr9:129010120-129010209
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTGCCGTCTCCACAGCTC
3' ss Score
9.13
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
CTCTGGAATGATGAAGTGGACAAG
Seq C2 exon
GCCGAGCAGGAGCTCCGCGTGGCCCAGACAGAGTTTGACCGGCAAGCAGAAGTGACCCGTCTCTTGCTGGAGGGAATCAGTAGCACTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-'24-31,'24-28,30-31
Average complexity
S
Mappability confidence:
100%=100=67%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(7.1=100)
A:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(7.8=100)
C2:
PF0311413=BAR=FE(11.4=100),PF0313112=bZIP_Maf=PD(24.4=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACATTCTCTCGGCCAGCG
R:
TGCTACTGATTCCCTCCAGCA
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development