HsaEX0058025 @ hg19
Exon Skipping
Gene
ENSG00000148341 | SH3GLB2
Description
SH3-domain GRB2-like endophilin B2 [Source:HGNC Symbol;Acc:10834]
Coordinates
chr9:131772399-131774577:-
Coord C1 exon
chr9:131774515-131774577
Coord A exon
chr9:131772949-131772972
Coord C2 exon
chr9:131772399-131772488
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTGCCGTCTCCACAGCTC
3' ss Score
9.13
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
CTCTGGAATGATGAAGTGGACAAG
Seq C2 exon
GCCGAGCAGGAGCTCCGCGTGGCCCAGACAGAGTTTGACCGGCAAGCAGAAGTGACCCGTCTCTTGCTGGAGGGAATCAGTAGCACTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-'11-20,'11-17,14-20
Average complexity
S
Mappability confidence:
100%=83=67%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(7.1=100)
A:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(7.8=100)
C2:
PF0311413=BAR=FE(11.4=100),PF0313112=bZIP_Maf=PD(24.4=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACATTCTCTCGGCCAGCG
R:
TGCTACTGATTCCCTCCAGCA
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)