RnoEX0080503 @ rn6
Exon Skipping
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8910997-8912963:-
Coord C1 exon
chr3:8912901-8912963
Coord A exon
chr3:8911451-8911474
Coord C2 exon
chr3:8910997-8911086
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTCTGGTCCCCACAGCTT
3' ss Score
9.42
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
CTTTGGAACGATGAGGTAGACAAG
Seq C2 exon
GCTGAGCAGGAGCTTCGAGCGGCCCAGACCGAGTTTGACCGGCAGGCAGAAGTTACTCGTCTCCTGCTGGAGGGGATCAGCAGTGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295-'12-22,'12-20,16-22
Average complexity
C1
Mappability confidence:
100%=86=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.208 C2=0.233
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(3.8=100)
C2:
PF0311413=BAR=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCAGGAGACTAGACCTCGT
R:
GACGAGTAACTTCTGCCTGCC
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]