MmuEX6100260 @ mm10
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30346611-30348617:-
Coord C1 exon
chr2:30348555-30348617
Coord A exon
chr2:30347081-30347104
Coord C2 exon
chr2:30346611-30346700
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTGGTCTCCATAGCTT
3' ss Score
9.27
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
Seq A exon
CTTTGGAACGATGAAGTCGACAAG
Seq C2 exon
GCTGAGCAGGAGCTTCGAGTGGCGCAGACAGAGTTTGACCGGCAGGCAGAAGTGACCCGTCTCCTGCTGGAGGGGATCAGCAGTACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-'26-25,'26-24,32-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(4.1=38.1)
A:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
C2:
PF0311413=BAR=FE(11.4=100),PF0313112=bZIP_Maf=PD(25.0=73.3)
Main Skipping Isoform:
ENSMUST00000113621fB3679
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTACATTCTATCGGCCAGCGC
R:
AGTACTGCTGATCCCCTCCAG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types