DreEX0066015 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31058988-31064981:-
Coord C1 exon
chr5:31064919-31064981
Coord A exon
chr5:31061709-31061732
Coord C2 exon
chr5:31058988-31059077
Length
24 bp
Sequences
Splice sites
3' ss Seq
CGTTATGCTTCATGTTCCAGCTC
3' ss Score
7.93
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCTGCGCCTGACTTTCAGGAGACTAGGCCACGAAATTATGTTCTGTCCGCCAGTGCATCTGCG
Seq A exon
CTCTGGAGTGAGGAAGTAGATAAA
Seq C2 exon
GCAGAGCATGAGTTGCGTGTGGCTCAGACGGAGTTTGACAGACAGGCAGAAGTGACTCGCCTCCTGCTGGAGGGCATCAGCAGCACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470_MULTIEX1-7/7=6-C2
Average complexity
C2
Mappability confidence:
100%=86=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(8.6=100)
A:
PF0311413=BAR=FE(2.5=100)
C2:
PF0311413=BAR=FE(11.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGACTAGGCCACGAAA
R:
CGAGTCACTTCTGCCTGTCTG
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]