BtaEX0032348 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99509108-99513771:-
Coord C1 exon
chr11:99513679-99513771
Coord A exon
chr11:99509735-99509758
Coord C2 exon
chr11:99509108-99509197
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTGTGGTCTCTGCAGCTC
3' ss Score
9.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTGCAGAACCGGCGTCTAGACCTGGATGCCTCCAAAGCGCGGCTCAAGAAGGCCAAGGCTGCCGAAGCCAAAGCCACG
Seq A exon
CTCTGGAATGATGAGGTGGACAAG
Seq C2 exon
GCTGAGCAGGAGCTCCGAGTGGCCCAGACGGAGTTTGACCGGCAGGCAGAAGTGACCCGGCTCCTGCTGGAGGGGATCAGCAGCACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(2.5=100)
C2:
PF0311413=BAR=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTAGACCTGGATGCCTCC
R:
CTTCTGCCTGCCGGTCAAAC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development