MmuEX6100260 @ mm9
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30202131-30204137:-
Coord C1 exon
chr2:30204075-30204137
Coord A exon
chr2:30202601-30202624
Coord C2 exon
chr2:30202131-30202220
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTGGTCTCCATAGCTT
3' ss Score
9.27
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
Seq A exon
CTTTGGAACGATGAAGTCGACAAG
Seq C2 exon
GCTGAGCAGGAGCTTCGAGTGGCGCAGACAGAGTTTGACCGGCAGGCAGAAGTGACCCGTCTCCTGCTGGAGGGGATCAGCAGTACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-'10-15,'10-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.062 C2=0.178
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(4.1=38.1)
A:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
C2:
PF0311413=BAR=FE(11.4=100),PF0313112=bZIP_Maf=PD(25.0=73.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTACATTCTATCGGCCAGCGC
R:
AGTACTGCTGATCCCCTCCAG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: