DreEX0066611 @ danRer10
Exon Skipping
Gene
ENSDARG00000024775 | si:ch211-129c21.1
Description
si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
Coordinates
chr22:22291877-22294957:-
Coord C1 exon
chr22:22294794-22294957
Coord A exon
chr22:22293587-22293639
Coord C2 exon
chr22:22291877-22292656
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCAGGCATTTTGCATTTTAGTAA
3' ss Score
4.69
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TTGTATGCAGGCTCTGCATCCGGGGTCGTCCAGATGCCTGTCAGCAACTGCAGTCGCTATTCTTCCTGTCTGGACTGTGTGCTGGCCAGAGACCCATACTGTGCCTGGGACGTCCCAGCTCAACGCTGTTCTAGATTTCCCGCATCAACTGAGCATGCAAAAAG
Seq A exon
TAACCTGATACAAAGTCTTAAAGATGGAGATGCCACTCAGTGCCCAATAACAG
Seq C2 exon
CTCCCATTGAACCAAAGGTCCGTACGCTGGTACTGGGAAACAACATCAGGCTGCTGTGCCGACCAGACTCCAACCTGGCCCAAGTGAACTGGAATTTAGCTGGAAAGCCACTGCCTTTCTCAAACAGGAAGTATACCATTTATAATGATGCAATCCTTATCTCTAACGCCTCCTCCGCTGACGCTGGACGTTACACATGCGTGTCAGTGGAGCAGGCGAAAGGGAAACACTACACCAAAACACTGGCCATTTATGACTTGCATGAAGAAGTAGCAGTCGTTGTGACAGATAAGATTAAGACCACGTTGGGAATACCTAATGAAATCTACACAACGTCATCAGGTTTGATTAAACCTGAAGAACCGCCGTCGTTTTCTAAAAATCAGGCCAGTGACAGTAAATGGATAGCGATGCAAGTGGCGCTGGCGATGCTGTCCATTATGATGGCGTGCCTGCTGATCTGGAACTTGTACATGGGCCACATCTCTCCATTCATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024775_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(70.9=70.9)
A:
PF0143720=PSI=PD(27.3=78.9),PF138951=Ig_2=PU(2.3=10.5)
C2:
PF138951=Ig_2=PD(96.5=35.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGTCTGGACTGTGTGC
R:
GTACCAGCGTACGGACCTTTG
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]