GgaEX0003964 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3454813-3457702:+
Coord C1 exon
chr28:3454813-3454979
Coord A exon
chr28:3455148-3455200
Coord C2 exon
chr28:3456245-3457702
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTATTTTCCCAGGAA
3' ss Score
8.45
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGGATGCTCTATGTGGGGTCCATGTCTGCAGTGGTACAGCTTCAAGTTTCGGGCTGCCACCGATATAAGTACTGCTTGGACTGCATCCTGGCAAGAGACCCGTACTGCGCCTGGTCTCAGGCTTCCCATGCCTGTGTTCTACTGTCAGATCAGACTGGTGATACAAA
Seq A exon
GAATTTAATTCAAAATGTGAAATATGGAGATGCTTCCAGCTGCCTTAGTGTAG
Seq C2 exon
AAAATGATGTGAGAAAATACCTCTTTACCCTTGGAAACAATGTTCATCTTAAATGTGTTCCTCTTTCAAATCTGGCAAGAGTAGTGTGGAAGTTCAATGGGAGCCGAATTCAGGATAAGGACTCTAAATACCTCCTCTATGATGGAGGAATAGCAATATTTAATGTGACAGTGGCTGAGACTGGATTCTATGATTGCCTCTCAGTAGAGAAATCCAAAGCAAAGGAATTCTTTATCACTGTGGCCCGTTACGCCCTTTATGCACATCAAAATACAGAGAAGGCAAATGTTAATGCTGCAACAGATGACAATAACGAAGCAGAAGCTGTGGGTTTTCAGTCCTCACTATCAACTTATTTACTGAAAGACGCGACAAAACAGAAATCTGTGGGCAGCCAAAAGGAGAATCTTCTTTTGAAACTCCTGAGCGCTGGTTTTGCTCTTCTTTTCTTTTTCTTGTTCATTTGGAATTTCTACAAGGGCCATATATCTCTGCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(66.7=67.9)
A:
PF0143720=PSI=FE(31.6=100)
C2:
PF0143720=PSI=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCCTGTGTTCTACTGT
R:
GGCTCCCATTGAACTTCCACA
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]