GgaEX0003964 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr28:2787121-2789960:+
Coord C1 exon
chr28:2787121-2787287
Coord A exon
chr28:2787456-2787508
Coord C2 exon
chr28:2788553-2789960
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTATTTTCCCAGGAA
3' ss Score
8.45
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGGATGCTCTATGTGGGGTCCATGTCTGCAGTGGTACAGCTTCAAGTTTCGGGCTGCCACCGATATAAGTACTGCTTGGACTGCATCCTGGCAAGAGACCCGTACTGCGCCTGGTCTCAGGCTTCCCATGCCTGTGTTCTACTGTCAGATCAGACTGGTGATACAAA
Seq A exon
GAATTTAATTCAAAATGTGAAATATGGAGATGCTTCCAGCTGCCTTAGTGTAG
Seq C2 exon
AAAATGATGTGAGAAAATACCTCTTTACCCTTGGAAACAATGTTCATCTTAAATGTGTTCCTCTTTCAAATCTGGCAAGAGTAGTGTGGAAGTTCAATGGGAGCCGAATTCAGGATAAGGACTCTAAATACCTCCTCTATGATGGAGGAATAGCAATATTTAATGTGACAGTGGCTGAGACTGGATTCTATGATTGCCTCTCAGTAGAGAAATCCAAAGCAAAGGAATTCTTTATCACTGTGGCCCGTTACGCCCTTTATGCACATCAAAATACAGAGAAGGCAAATGTTAATGCTGCAACAGATGACAATAACGAAGCAGAAGCTGTGGGTTTTCAGTCCTCACTATCAACTTATTTACTGAAAGACGCGACAAAACAGAAATCTGTGGGCAGCCAAAAGGAGAATCTTCTTTTGAAACTCCTGAGCGCTGGTTTTGCTCTTCTTTTCTTTTTCTTGTTCATTTGGAATTTCTACAAGGGCCATATATCTCTGCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(66.7=67.9)
A:
PF0143720=PSI=FE(31.6=100)
C2:
PF0143720=PSI=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCCTGTGTTCTACTGT
R:
GGCTCCCATTGAACTTCCACA
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]