DreEX0069971 @ danRer10
Exon Skipping
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11062044-11064342:-
Coord C1 exon
chr4:11064037-11064342
Coord A exon
chr4:11063644-11063952
Coord C2 exon
chr4:11062044-11062343
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTCCTTTATTAGAAA
3' ss Score
8.71
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
ATTTAGGCATCAGACTGGTTGGAAATTCTCGCTGTTCAGGGAGATTAGAGGTGCCTTCTGGGAACACAAGGTACACAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGAACAGTTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCACTGCAGAGGAAATGAGTATCAATTTGCTTTCTGTCCTGTATCATCTTCTCACAGCAATTGCTCCTCTAACAGTAATGTTGGACTTGTGTGTTCTG
Seq A exon
AAACATTAAGATTAGTGGGTAGTGGCAATACATGTGCTGGTCGAGTGGAGGTTTATCATAGTGGTCAGTGGGGAACAGTGAGTGATGTTGGCTGGGATATGGCTGATGCTACAGTGGTATGTAGAGAACTGGGATGTGGAGAGGCTGTAGGTGCACCTAAGCAGGCCTACTTTGGCCAAGGGCGAGGACAAGTCTGGATTATTAATGTGATCTGTACTGGAGCAGAATCTGCACTAAAGGACTGTCGATCAATTGGTTGGGGAAAACATCAGGCTAATCATGCTGATGATGCTGGGGTTATCTGCTCTG
Seq C2 exon
GGTCCAGGCTAGTTGGAGCTTCTCGCTGTTCTGGGCAGTTAGAGATACTACGAGAGAACACATGGCACACAATGTGTGACACTGCCTTTGACCAGCAGGATGCAGAGGTTCTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTAACAAAGGAGACGCTCGGATGTGGACACAAGAGATTCGCTGCAGAGGAAATGAGCCTCATATATCCGTCTGTCCAATATCTTCATTCATAGTCAACTGTACCCATAAAAATGGCATAAGAATGTCATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=94.2)
C2:
PF0053013=SRCR=WD(100=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTGTGATGCTGCCTTT
R:
CAGAACCTCTGCATCCTGCTG
Band lengths:
345-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]