DreEX0070154 @ danRer10
Exon Skipping
Gene
ENSDARG00000031588 | si:dkey-239b22.1
Description
si:dkey-239b22.1 [Source:ZFIN;Acc:ZDB-GENE-131119-12]
Coordinates
chr12:38770846-38777436:+
Coord C1 exon
chr12:38770846-38771262
Coord A exon
chr12:38771494-38771880
Coord C2 exon
chr12:38777371-38777436
Length
387 bp
Sequences
Splice sites
3' ss Seq
TCCGTTTTTCTTCTTAACAGTTG
3' ss Score
10.26
5' ss Seq
TAGGTGATA
5' ss Score
2.23
Exon sequences
Seq C1 exon
ATGTCAGAACTCCCGTCTCTGAACCGTGCACTCAGTACAGTATTCTTGATGATGGCTGGAGAGGTTTAGAAGTACTCGGCTACAACTCTCCATACAATGTCCACGATGACACTCTTGTTGAATGGAGCGGCTGGTATCGGCTGTATTTGAATGGCACAAGTGCTCAGCTCTCTGAGTGGTGTGTGAGCTACTCTGGATGTGGTGGTGAAACTGGACTGTATCTCAATGCCTCTCATCCCAAACTTGAGGATGGAGTGGTGACCCGTGATGTGTTAGGAATGTCATCAGGGTGGTATTTCAGCCAATGTGGCAACTATAGATCCAACTCCATCCAAGTCAAAGCCTGCCCAGGAGATTATTACGTCTATGAACTCATCAAACCAAGCACATTAATGCCTAAGCCTACATACTGTACAG
Seq A exon
TTGCTTTCAACAACACCAGTAATGATCCTTGTTACGACTATGAATCTCTGGATCGTCCCTGGAGAGCCACAAATGAAAGTGGATTTTACATCTGTGACGGCTCTTTCACCTGGAACGGCTGGTACCGACTTTTCTATGATGGAATGAACATCCGAATGCCAGAGAGCTGTGTTAGTGGAGGAGGCTGTAACACACAAAATGGTCTGACACTCAACGGTCCTCACCCTCACATAGAGGATGGAGTGGTGATCAGGGAGGTCTGTGGAAGCACATGGTATAGCTGCTGTGCTTTCAGATCAACACCTATCAGAGTAAAAGCTTGCCCAGGCGATTACTATGTCTATGAATTGGCTGATCCAATGTTCTCATGTTCAGGATATTGTATAG
Seq C2 exon
ATATTAGTACTATAACAGAAGCCTTTTCCTCTACAAGCCCAGCTTCGGTTATTGGGTCCAGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031588_MULTIEX1-12/59=11-20
Average complexity
C3
Mappability confidence:
76%=100=79%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGTATCGGCTGTATTT
R:
GACCCAATAACCGAAGCTGGG
Band lengths:
348-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]