DreEX0070161 @ danRer10
Exon Skipping
Gene
ENSDARG00000031588 | si:dkey-239b22.1
Description
si:dkey-239b22.1 [Source:ZFIN;Acc:ZDB-GENE-131119-12]
Coordinates
chr12:38769475-38777436:+
Coord C1 exon
chr12:38769475-38769531
Coord A exon
chr12:38769803-38770177
Coord C2 exon
chr12:38777371-38777436
Length
375 bp
Sequences
Splice sites
3' ss Seq
ATAAATTTTTGTAACACCAGCTT
3' ss Score
1.09
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGTCAGGAATACTAGTATCAGTGTTTCAACTGCGATTCCACAGACTGCCTTAGCTG
Seq A exon
CTTTCCAGATTGACCCATGCTATAACTACACATCCCTGGATGATCCATGGAGGGCAATAGAAAATCAATATTCATACAATTGTGATGCTAGTTTAAGTTGGGTTGGCTGGTATCGTCTCTTCCTCAATGGTCAAAATGCTCAGATGCCAGAGACGTGTGTTGATGAGATGAGATGTGGCACCGTTGCTCCACTGTGGCTAAATGGTCAACATCCAAAAGTTGAAGATGGAGTGGTCACCCGAGATGTCTGTGGCCACTGGAGCGGTGACTGCTGCAATTATATATTTGATCCCATGAAAGTGAAAGCCTGCCCTGGCAATTATTATGTGTATGAGTTCAAAAGCCCAGTGTTCTGCTCTACGGCATACTGTGCAG
Seq C2 exon
ATATTAGTACTATAACAGAAGCCTTTTCCTCTACAAGCCCAGCTTCGGTTATTGGGTCCAGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031588_MULTIEX1-9/59=8-20
Average complexity
C3
Mappability confidence:
78%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]