DreEX0070157 @ danRer10
Exon Skipping
Gene
ENSDARG00000031588 | si:dkey-239b22.1
Description
si:dkey-239b22.1 [Source:ZFIN;Acc:ZDB-GENE-131119-12]
Coordinates
chr12:38762064-38777436:+
Coord C1 exon
chr12:38762064-38762141
Coord A exon
chr12:38763935-38764339
Coord C2 exon
chr12:38777371-38777436
Length
405 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTATCTCCTCAGCTG
3' ss Score
9.89
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACATCAACACACTTCCACAGACAACTCCCAGTCCAGCTGTTTATACAACTCCAAGACCAGCTAATAATATATCAATGT
Seq A exon
CTGACGTAACGGGTCATGATCCATGCCACAGCTACAACGTTCTTGACAATTACTGGAGAAGCACGCTCAATTACTTGCCTTTGTATGGATCTATCTCTGGATATGATGACACTCGTGTTGCATGGCAGGGCTGGTATCGACTCTTCATTAATGGATCGAGCGCTCAGATGCCTGAGTGGTGTTTCAGCTCAATGTCATGTGGAGGTTTTACTTCTCTGTGGCTTGGTGGTTCACATCCACATCTAGAAGATGGAGTTGTTACTCGTGATGTCTACGGCTCTGTTAACGAACAGTGCAGTTCCTATCAATCCGACCCAATCCAAGTCAAAGCTTGTCCTGGAAATTACTATGTCTACAAGCTAATAAAACCAAATCTATCGATCCCAGTGCCTACATACTGTGCAG
Seq C2 exon
ATATTAGTACTATAACAGAAGCCTTTTCCTCTACAAGCCCAGCTTCGGTTATTGGGTCCAGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031588_MULTIEX1-4/59=3-20
Average complexity
C3
Mappability confidence:
81%=100=79%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]