DreEX0071280 @ danRer10
Exon Skipping
Gene
ENSDARG00000095339 | si:dkeyp-44a8.4
Description
si:dkeyp-44a8.4 [Source:ZFIN;Acc:ZDB-GENE-070705-543]
Coordinates
chr14:6345974-6349333:-
Coord C1 exon
chr14:6349248-6349333
Coord A exon
chr14:6346655-6346663
Coord C2 exon
chr14:6345974-6346033
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTATGAATAATTATGTATAAAAC
3' ss Score
-7.5
5' ss Seq
GAAGTAAAC
5' ss Score
0.76
Exon sequences
Seq C1 exon
CAAATCAGGGTCGCCCCGGTGAGAAAGGCATGTCAGCATCTGGTGACATCATCGACTTCAATGGAAAACTCTTAGATGCCTTTCAG
Seq A exon
AACATTGAA
Seq C2 exon
TTACTTACCAAACAGGGTCCACCTGGCCCTCCGGGACCACCAGGACAAGAAGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095339-MICROEX4
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(19.0=42.3),PF0139113=Collagen=PU(1.8=3.8)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000166979fB5935
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGAAAGGCATGTCAGCA
R:
GGTGGACCCTGTTTGGTAAGT
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]