GgaEX1016553 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13595075-13596211:+
Coord C1 exon
chr13:13595075-13595152
Coord A exon
chr13:13595474-13595497
Coord C2 exon
chr13:13596158-13596211
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTAATTGTTTTATAACAGGCT
3' ss Score
6.8
5' ss Seq
GTGGTAATT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GGCCCCCCTGGCCCAAAAGGGGAACAGGGTGACACAGTGGTCATCGACTACGACGGCCGCATCCTGGATGCACACAAG
Seq A exon
GCTGCGGGGATACCCAAAGTGGTG
Seq C2 exon
GGCTCTCCAGGTCCCCCAGGGCCGCCGGGCCCGCAGGGCGCTCCAGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.7=46.2),PF0139113=Collagen=PU(5.0=11.5)
A:
PF0139113=Collagen=PU(10.9=87.5)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Inclusion Isoform:
ENSGALT00000010851fB6346
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]