MmuEX1007258 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51567896-51569514:+
Coord C1 exon
chr11:51567896-51567973
Coord A exon
chr11:51568472-51568495
Coord C2 exon
chr11:51569461-51569514
Length
24 bp
Sequences
Splice sites
3' ss Seq
ATTCCAGTTACCTCCTACAGGCC
3' ss Score
5.88
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GGTGCCCCGGGCCTCAAGGGAGAACAAGGTGACACAGTGGTAATCGACTATGACGGCAGGATCTTAGATGCCCTAAAG
Seq A exon
GCCTCCGGGAAGTACAAGTTGATG
Seq C2 exon
GGTCCCCCTGGACCACAGGGAGCTCCTGGGCCACCAGGGATCCCTGGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(19.7=46.2),PF0139113=Collagen=PU(5.1=11.5)
A:
PF0139113=Collagen=PU(11.1=87.5)
C2:
PF0139113=Collagen=FE(28.8=100)
Main Inclusion Isoform:
ENSMUST00000102765fB8039
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACAAGGTGACACAGTGG
R:
CTTGGCTCCAGGGATCCC
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types