DreEX0071283 @ danRer10
Exon Skipping
Gene
ENSDARG00000095339 | si:dkeyp-44a8.4
Description
si:dkeyp-44a8.4 [Source:ZFIN;Acc:ZDB-GENE-070705-543]
Coordinates
chr14:6345974-6349325:-
Coord C1 exon
chr14:6349248-6349325
Coord A exon
chr14:6349010-6349033
Coord C2 exon
chr14:6345974-6346018
Length
24 bp
Sequences
Splice sites
3' ss Seq
GACTTATTTTTTTCTGGCAGGCC
3' ss Score
8.9
5' ss Seq
TCGGTAACC
5' ss Score
5.34
Exon sequences
Seq C1 exon
GGTCGCCCCGGTGAGAAAGGCATGTCAGCATCTGGTGACATCATCGACTTCAATGGAAAACTCTTAGATGCCTTTCAG
Seq A exon
GCCATCAAAACCATCAGTGTCTCG
Seq C2 exon
GGTCCACCTGGCCCTCCGGGACCACCAGGACAAGAAGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095339_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=0.875 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(19.0=42.3),PF0139113=Collagen=PU(1.8=3.8)
A:
PF0139113=Collagen=PU(1.8=12.5)
C2:
NO
Main Inclusion Isoform:
ENSDART00000166979fB5934
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCATGTCAGCATCTGGTG
R:
GACCTTCTTGTCCTGGTGGTC
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]