DreEX0072240 @ danRer10
Exon Skipping
Gene
ENSDARG00000099353 | slc25a13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:ZFIN;Acc:ZDB-GENE-080319-2]
Coordinates
chr19:41761791-41786189:-
Coord C1 exon
chr19:41786047-41786189
Coord A exon
chr19:41767767-41767882
Coord C2 exon
chr19:41761791-41761930
Length
116 bp
Sequences
Splice sites
3' ss Seq
AGTCTGTTTGTCTCCATCAGGTT
3' ss Score
8.24
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TATGCCAGTGTGGAGAAGAATGGAGAGCGCTACATGTCCCCAGAGGACTTTGTCTTCAAATTTCTCCATGCGCAAACAGACATTTGGCTTTCCAAGGATTCCGCCGTTCTACTGACAGGTGTTTTGGACCAAACCAAAGATGG
Seq A exon
GTTGATCTCCTTCCAGGAGTTTCTGGCTTTTGAGTCGGTGCTGTGCGCTCCGGATGCTCTCTTCATGGTCGCCTTCCAGCTCTTTGACAAAACTGGAAATGGCATTGCCACCTTTG
Seq C2 exon
AGGATGTGAAACAAGTTTTCACTCAGACCACAATCCACCAGCACATCCCCTTTAACTGGAACTCCGAATTTGTTCAGCTTCACTTCGGCGCCGACAGGAAGAAGCACCTGAACTACGGGGAGTTCACTCAGTTTCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099353_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(42.1=16.7)
A:
PF0003627=EF-hand_1=PD(52.6=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
C2:
PF0003627=EF-hand_1=PD(31.0=19.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAAGAATGGAGAGCGC
R:
TTCAGGTGCTTCTTCCTGTCG
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]