RnoEX0081783 @ rn6
Exon Skipping
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31667951-31718822:-
Coord C1 exon
chr4:31718680-31718822
Coord A exon
chr4:31691338-31691453
Coord C2 exon
chr4:31667951-31668090
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGCTTATTTTATATTGCAGGTT
3' ss Score
9.73
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TATGCAAGCATTGAAAAAAATGGTGAATTTTTTATGTCACCTCATGACTTTGTCACTCGGTATTTGAATATTTTTGGAGAAAGCCAGCCCAACCCGAAGACTGTGGAACTGTTAAGCGGTGTGGTGGATCAGACCAAAGATGG
Seq A exon
GTTAATATCCTTCCAAGAATTTGTAGCGTTCGAATCTGTCCTGTGTGCTCCGGATGCCTTGTTTATGGTGGCCTTCCAGCTGTTTGACAAAGCTGGCAAAGGAGAGGTTACTTTTG
Seq C2 exon
AGGACGTCAGGCAAGTTTTTGGACAGACGACAATTCATCAACATATTCCGTTTAACTGGGATTCAGAATTCGTCCAACTACATTTTGGAAAAGAGAGAAAAAGACACCTTACATATGCAGAGTTCACTCAGTTTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957-'6-5,'6-2,10-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(68.1=100)
A:
PF134991=EF-hand_7=PD(14.5=25.0),PF134051=EF-hand_6=PU(50.0=47.5)
C2:
PF134051=EF-hand_6=PD(47.4=38.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGACTTTGTCACTCGGT
R:
ACAAAAACTGAGTGAACTCTGCA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]