DreEX0072463 @ danRer10
Exon Skipping
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10800151-10808640:+
Coord C1 exon
chr10:10800151-10800545
Coord A exon
chr10:10806296-10806454
Coord C2 exon
chr10:10808571-10808640
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGCATGTTATTTGTTTTAGCAA
3' ss Score
6.64
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGCAGCCAGTGTATTGCTGAGGGTAAAACTGAATGTCAAGAAACACCTACGTGAACGCAACACAGTGCCCAAACTGTTTGCCAAGTCCGTCAAGAAGTATGGAAACAAGACAGCTCTGATTTTCGAAGGAACGGATGAGAAATGGAGCTTCAAGGAGCTCGATGAGTACTCCAATCGCGTGGCCAACTTTTTACTCCAGCAAGGCTTCAGGGAGGGCGATGTGGTGGCTCTGTTCATGGAGAACCGCCATCAGTATGTTGGCCTCTGGCTGGGCATGGCGAAGATCGGCGTGGAGGCAGCACTTATCAACTTCAACCTGAGACTAGAGGCTCTGGTTCACTGTGTCAACATCTCCAGCGCCAAAGCTGTGGTGTTCGGCAGTGAGCTAACAGAAG
Seq A exon
CAATGTGTGAGGTGCACAGCTCCATGGGAAAGACTGTTAAGCTCTTCGTCTCTGGTGAATGGGACCCTAAGCGGGTTCCTGTAGGAACAGAGCATCTAGACCCGCTCCTGGAGACCACTAGTACAATCCAGCCCAAACAACCAGATCGCAGCTTCACAG
Seq C2 exon
ATCGGCTGTTTTACATCTACACATCCGGAACCACTGGAATGCCAAAAGCTGCTATTGTTGTACATAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.5=79.7)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTGGCCAACTTTTTACTC
R:
TCCAGTGGTTCCGGATGTGTA
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]