GgaEX1053188 @ galGal3
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
NA
Coordinates
chr17:5608311-5609916:-
Coord C1 exon
chr17:5609522-5609916
Coord A exon
chr17:5608742-5608900
Coord C2 exon
chr17:5608311-5608380
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTTACTTTCTCAGCTA
3' ss Score
7.79
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
CACGGGGCTGGTCCTGCTGCGGGTGAAGTGGCAGGTGTGGAGGCACGTGAGGGAGAAGAACACGATCGCCAAGATCTTCCAGAGGACTGCGAGCAAGTGTCCAGAGAAAACAGCACTGATCTTCCAAGGCACGGGCGAGAGCTGGACCTTCCGGCAGCTGGATGAGTACTCCAACCAAGTGGCCAATTTCTTCCACGGCCAAGGCTTCCGCTCCGGTGACGTGGTGGCTCTGTTCATGGAGTCCCGCAATCAGTACGTGGGGCTGTGGCTCGGCTTGGCCAAGATCGGGGTGGAGACGGCCCTGGTGAATTCCAACCTACGCATGGAGGCCTTGCTGCACTGCATCACCATCTCCAACTCCAAGGCTGTGGTTTTTGGAGTGGAAATGATGGAAG
Seq A exon
CTATGAAGGAGGTGCAGTCCTCCATGGAGAAGTCTGTCCATCTCTTCTGGTCAGGAGAAGGAAGCCCTGAGTCCGCACTTTCTGGTGCAAAGCACCTGGATCCCCTCCTGCAGACAGCTCTTCGACAGCAGCCAGATCCCCCTGAGAAGGGCTTTCTCG
Seq C2 exon
ATAAACTCTTCTATATCTATACCTCTGGCACTACGGGAATGCCCAAGGCTGCTATTGTGGTCAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965-'3-4,'3-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.5=79.7)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCCAATTTCTTCCACGG
R:
TTCCCGTAGTGCCAGAGGTAT
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]