MmuEX0042996 @ mm9
Exon Skipping
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29661136-29665251:+
Coord C1 exon
chr2:29661136-29661530
Coord A exon
chr2:29662876-29663034
Coord C2 exon
chr2:29665182-29665251
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGAAGTGTCTCGTCTTCAGCTA
3' ss Score
5.52
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TGGTGGCATGGTGCTCCTGAAGGTGAAGACCAAGGTGCGACGGTACCTTCAGGAGCGGAAGACGGTGCCCCTGCTGTTTGCTTCAATGGTACAGCGCCACCCGGACAAGACAGCCCTGATTTTCGAGGGCACAGACACTCACTGGACCTTCCGCCAGCTGGATGAGTACTCCAGTAGTGTGGCCAACTTCCTGCAGGCCCGGGGCCTGGCCTCAGGCAATGTAGTTGCCCTCTTTATGGAAAACCGCAATGAGTTTGTGGGTCTGTGGCTAGGCATGGCCAAGCTGGGCGTGGAGGCGGCTCTCATCAACACCAACCTTAGGCGGGATGCCCTGCGCCACTGTCTTGACACCTCAAAGGCACGAGCTCTCATCTTTGGCAGTGAGATGGCCTCAG
Seq A exon
CTATCTGTGAGATCCATGCTAGCCTGGAGCCCACACTCAGCCTCTTCTGCTCTGGATCCTGGGAGCCCAGCACAGTGCCCGTCAGCACAGAGCATCTGGACCCTCTTCTGGAAGATGCCCCGAAGCACCTGCCCAGTCACCCAGACAAGGGTTTTACAG
Seq C2 exon
ATAAGCTCTTCTACATCTACACATCGGGCACCACGGGGCTACCCAAAGCTGCCATTGTGGTGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.5=79.7)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGTGGCCAACTTCCTGC
R:
GTGGTGCCCGATGTGTAGATG
Band lengths:
256-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: