DreEX0072631 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20512585-20513990:+
Coord C1 exon
chr23:20512585-20512753
Coord A exon
chr23:20512872-20512955
Coord C2 exon
chr23:20513815-20513990
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCCACTCTTTGACACCCAGGTC
3' ss Score
6.07
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
AATCCATTCCTGATCCTGGTGGTTGTCCTGATTTCCAGTGGTCTCTTCATGTTCACTCTCAAGTCCACTCAGTTTAATCTGGAGGGTTTCATCATGGTCCTGTTAGCCTCTTTTATCGGAGGAATCCGCTGGACTCTCACTCAGTTGCTCATGCAGAAAGCAGAGCTTG
Seq A exon
GTCTTCAGAACCCCATAGACACCATGTACCATCTGCAGCCCCTCATGTTCCTTGGCCTATTTCCCTTGTTTCTTCTTAATGAGG
Seq C2 exon
GACTGAGTGTGAGCACCACAGAGAAGCTGTTCAGGGTCAGTGAGCTCTCTCACCTGCTGTACTCTTTAGTCACTCTGTCTGTGGGTGGCATGCTGGCGTTCGGGCTCGGCTTCTCTGAGTTCCTGCTGGTGTCACGCACGTCCAGTCTTACACTGTCCATTGCAGGCATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=PD(13.7=33.3),PF065706=DUF1129=FE(56.6=100),PF0315111=TPT=PU(18.5=49.1)
A:
PF065706=DUF1129=FE(28.3=100),PF0315111=TPT=FE(18.5=100)
C2:
PF065706=DUF1129=PD(13.1=22.0),PF0315111=TPT=FE(38.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTCTCACTCAGTTGC
R:
TGACACCAGCAGGAACTCAGA
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]