MmuEX0043139 @ mm9
Exon Skipping
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165103741-165106454:-
Coord C1 exon
chr2:165106286-165106454
Coord A exon
chr2:165106117-165106200
Coord C2 exon
chr2:165103741-165103916
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCCATGTCCTGTCCTGCAGGCC
3' ss Score
10.92
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
CGTGCAGCCCTGGTCCTGGTGGTCCTGCTCATTGCTGGGGGCCTCTTCATGTTTACCTATAAGTCCACGCAGTTCAATGTGGAGGGCTTTGCCTTGGTGCTGGGGGCTTCGTTCATCGGTGGCATCCGCTGGACCCTTACACAAATACTCCTGCAGAAAGCCGATCTTG
Seq A exon
GCCTCCAGAATCCCATTGACACCATGTTCCACCTGCAGCCACTCATGTTTCTGGGCCTCTTCCCTCTCTTTGCCATATTCGAAG
Seq C2 exon
GTCTCCACTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACACAGGGCTGCTCCTGTGGGTGCTTGGGAGCCTCCTCCTCGGTGGGATTCTGGCCTTCGGTTTGGGCTTCTCCGAGTTCCTCCTGGTCTCCAGAACGTCAAGCCTCACACTCTCCATCGCTGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=PD(13.4=33.3),PF0315111=TPT=PU(18.5=49.1)
A:
PF0315111=TPT=PD(48.2=93.1)
C2:
PF0315111=TPT=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGAAAGCCGATCTTG
R:
GTGAGGCTTGACGTTCTGGAG
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: