MmuEX0043137 @ mm9
Exon Skipping
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165103741-165107644:-
Coord C1 exon
chr2:165107581-165107644
Coord A exon
chr2:165106808-165106880
Coord C2 exon
chr2:165103741-165103916
Length
73 bp
Sequences
Splice sites
3' ss Seq
GGGTATCTGCTCTGCCCCAGGTA
3' ss Score
7.31
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CACTGGCAACAGCACTTGACGTGGGCCTGTCCAACTGGAGCTTCCTCTACATCACTGTGTCCCT
Seq A exon
GTACACGATGACCAAATCCTCTGCTGTGCTCTTTATCCTGATTTTCTCTCTCATCTTCAAGCTGGAGGAACTG
Seq C2 exon
GTCTCCACTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACACAGGGCTGCTCCTGTGGGTGCTTGGGAGCCTCCTCCTCGGTGGGATTCTGGCCTTCGGTTTGGGCTTCTCCGAGTTCCTCCTGGTCTCCAGAACGTCAAGCCTCACACTCTCCATCGCTGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664_MULTIEX1-2/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(14.8=100)
A:
PF0089215=EamA=FE(16.9=100)
C2:
PF0315111=TPT=FE(38.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACAGCACTTGACGTG
R:
GAACTCGGAGAAGCCCAAACC
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: