BtaEX0033112 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003635 | SLC35C2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr13:75804318-75805672:-
Coord C1 exon
chr13:75805603-75805672
Coord A exon
chr13:75805026-75805098
Coord C2 exon
chr13:75804318-75804486
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGGGGACGTTTCCCTTGCAGGTA
3' ss Score
10.06
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CCACAGCACTGGCCACAGCGCTGGATGTGGGCTTGTCCAACTGGAGCTTCCTCTACATCACCGTCTCGCT
Seq A exon
GTACACGATGACCAAGTCCTCAGCCGTCCTCTTCATCCTCATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq C2 exon
CGCGCGGCGCTAGTCTTGGTGGTCCTGCTCATCGCCGGGGGCCTCTTCATGTTCACCTACAAGTCGACGCAGTTCAACATCGAGGGCTTCGCCTTGGTGCTGGGTGCCTCTTTCATCGGCGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCGGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003635-'4-5,'4-4,6-5
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084496=UAA=FE(18.3=100)
A:
PF084496=UAA=FE(19.0=100)
C2:
PF084496=UAA=FE(44.4=100),PF0315111=TPT=PU(75.7=49.1),PF0315111=TPT=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCCAACTGGAGCTTCC
R:
GAATGCCGCCGATGAAAGAGG
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development