GgaEX1053317 @ galGal4
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
solute carrier family 35 member C2 [Source:RefSeq peptide;Acc:NP_001026036]
Coordinates
chr20:11074437-11075133:-
Coord C1 exon
chr20:11075070-11075133
Coord A exon
chr20:11074778-11074850
Coord C2 exon
chr20:11074437-11074605
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTGGTCCTTACAGCTA
3' ss Score
8.63
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
CTTTGTCAACTTCCTTGGATATTGGGCTGAGTAACTGGAGCTTCCTGTATGTCACCGTCTCCCT
Seq A exon
CTACACGATGACCAAATCCTCTGCCATTCTCTTCATCCTGTTGTTTTCATTGCTCTTCAAGCTGGAGGAAATG
Seq C2 exon
AGGGTGGCATTGGTGCTGGTGGTTGTGCTCATCGCTGGGGGGCTCTTCATGTTCACCTACAAGTCCACGCAGTTCAACACACAGGGGTTCATGCTGGTGCTCTGTGCCTCTTTCCTTGGGGGTGTTCGCTGGACTCTCACACAGATACTTATGCAGAAGGCTGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939-'8-7,'8-6,9-7
Average complexity
C1
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0315111=TPT=PU(18.5=49.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTATGTCACCGTCTCCC
R:
TCTGTGTGAGAGTCCAGCGAA
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]