HsaEX0059410 @ hg19
Exon Skipping
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35, member C2 [Source:HGNC Symbol;Acc:17117]
Coordinates
chr20:44983712-44985276:-
Coord C1 exon
chr20:44985213-44985276
Coord A exon
chr20:44984441-44984513
Coord C2 exon
chr20:44983712-44983880
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTGGGTAATTTTGCTTCCAGGTA
3' ss Score
6.76
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CTCTGGCGACGGCGCTTGACGTGGGCTTGTCCAACTGGAGCTTCCTGTATGTCACCGTCTCGCT
Seq A exon
GTACACAATGACCAAATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq C2 exon
CGCGCGGCACTGGTCCTGGTGGTCCTCCTCATCGCCGGGGGTCTCTTCATGTTCACCTACAAGTCCACACAGTTCAACGTGGAGGGCTTCGCCTTGGTGCTGGGGGCCTCGTTCATCGGTGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(14.4=100)
A:
PF0089215=EamA=FE(16.4=100)
C2:
PF0089215=EamA=PD(13.0=33.3),PF0315111=TPT=PU(18.5=49.1)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCCAACTGGAGCTTCC
R:
GAATGCCACCGATGAACGAGG
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)