GgaEX1053317 @ galGal3
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
NA
Coordinates
chr20:10679033-10679729:-
Coord C1 exon
chr20:10679666-10679729
Coord A exon
chr20:10679374-10679446
Coord C2 exon
chr20:10679033-10679201
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTGGTCCTTACAGCTA
3' ss Score
8.63
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
CTTTGTCAACTTCCTTGGATATTGGGCTGAGTAACTGGAGCTTCCTGTATGTCACCGTCTCCCT
Seq A exon
CTACACGATGACCAAATCCTCTGCCATTCTCTTCATCCTGTTGTTTTCATTGCTCTTCAAGCTGGAGGAAATG
Seq C2 exon
AGGGTGGCATTGGTGCTGGTGGTTGTGCTCATCGCTGGGGGGCTCTTCATGTTCACCTACAAGTCCACGCAGTTCAACACACAGGGGTTCATGCTGGTGCTCTGTGCCTCTTTCCTTGGGGGTGTTCGCTGGACTCTCACACAGATACTTATGCAGAAGGCTGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939-'9-6,'9-5,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(16.2=100)
A:
PF0089215=EamA=FE(18.5=100)
C2:
PF0089215=EamA=PD(14.6=33.3),PF0315111=TPT=PU(18.5=49.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTATGTCACCGTCTCCC
R:
TCTGTGTGAGAGTCCAGCGAA
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]