RnoEX0082343 @ rn6
Exon Skipping
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161802896-161806939:-
Coord C1 exon
chr3:161806876-161806939
Coord A exon
chr3:161806138-161806210
Coord C2 exon
chr3:161802896-161803071
Length
73 bp
Sequences
Splice sites
3' ss Seq
GGGTATCTGCTCTGCTCCAGGTA
3' ss Score
7.92
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CACTGGCAACAGCACTTGACGTGGGCCTGTCCAACTGGAGCTTCCTCTACATCACTGTGTCTCT
Seq A exon
GTACACAATGACCAAATCCTCTGCTGTGCTCTTTATCCTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq C2 exon
GTCTCCATTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACCCGGGCCTGCTCCTGTGGGTTCTGGGGAGCCTCCTCCTCGGAGGGATTCTGGCCTTTGGCTTGGGCTTCTCTGAGTTCCTCTTGGTCTCCAGAACCTCGAGCCTCACACTCTCCATTGCTGGCATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649_MULTIEX1-4/6=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0315111=TPT=FE(38.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAACTGGAGCTTCCTCT
R:
GCTCGAGGTTCTGGAGACCAA
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]