GgaEX1053320 @ galGal3
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
NA
Coordinates
chr20:10678166-10679201:-
Coord C1 exon
chr20:10679033-10679201
Coord A exon
chr20:10678664-10678747
Coord C2 exon
chr20:10678166-10678341
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATTGATTCTCTTCTTGCAGGGC
3' ss Score
9.44
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
AGGGTGGCATTGGTGCTGGTGGTTGTGCTCATCGCTGGGGGGCTCTTCATGTTCACCTACAAGTCCACGCAGTTCAACACACAGGGGTTCATGCTGGTGCTCTGTGCCTCTTTCCTTGGGGGTGTTCGCTGGACTCTCACACAGATACTTATGCAGAAGGCTGAACTGG
Seq A exon
GGCTCCAGAACCCCATTGATATCATGTTTCACCTGCAGCCACTCATGTTCCTGGTGCTCTTCCCTCTGTTTGCAGTGTTTGAGG
Seq C2 exon
GCCTGCCTTTGTCCGTATCAGAGAGGCTCTTCCACTTCCATGAAGCAGGAGTGATGTTCTGTATGGTAGGAAAGCTGTTGTTGGGTGGAATTCTTGCCTTTGGTCTAGGCTTTTCTGAGTTCCTCTTGGTTTCCAGAACATCTAGCCTCACCCTTTCTATTGCTGGTATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939-'11-8,'11-7,12-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=PD(14.6=33.3),PF0315111=TPT=PU(18.5=49.1)
A:
PF0315111=TPT=FE(18.5=100)
C2:
PF0315111=TPT=FE(38.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACACAGGGGTTCATGCTG
R:
TCCACCCAACAACAGCTTTCC
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]