DreEX0072648 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20505670-20507792:+
Coord C1 exon
chr23:20505670-20505818
Coord A exon
chr23:20505936-20506086
Coord C2 exon
chr23:20507729-20507792
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTAACTTAATTTCAGGAC
3' ss Score
7.56
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTGTTAGCTGAGCCCTGTGGTATCCGGGTTGTCCAGGATGGCGTGCCCGACACACTTCCTCTGCAAGGCGCTGCGCACTGTGGGTCTGGTGCTTTTCTACTATGCGTTTTCTATTGGCATAACCTTCTACAACAAATGGCTCATGAAG
Seq A exon
GACTTCCACTTTCCTCTTTTTATGACCCTGGTCCATCTCACTATAATATTCTGTTTATCCACACTGACACGCTCTGCTATGCAGTGCTGGACAGGAAAGCCTCGAGTTACTCTTCCCTGGAAGGTCTACCTTTCTAAAGTAGCCCCTACAG
Seq C2 exon
CCCTGGCGACAACGTTGGATATTGGACTGTCCAACTGGAGTTTCCTTTTCATCACTATTAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=PU(15.8=59.5)
A:
PF0089215=EamA=FE(36.0=100)
C2:
PF0089215=EamA=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTAGCTGAGCCCTGTGG
R:
CTAATAGTGATGAAAAGGAAACTCCA
Band lengths:
210-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]