HsaEX0059409 @ hg19
Exon Skipping
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35, member C2 [Source:HGNC Symbol;Acc:17117]
Coordinates
chr20:44985213-44987597:-
Coord C1 exon
chr20:44987026-44987597
Coord A exon
chr20:44986262-44986412
Coord C2 exon
chr20:44985213-44985276
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGGGCTCCATACAGAGC
3' ss Score
5.7
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGCCTGTGCCGTTGTGGGCAGCCCCTCCAGAGCCCTGAGTCACGCAGCCTTCAGAGGCACCCATGGCTACGAGAAGCACAGTCTCTGCCTGAGGCTCCAGAGCGGCCCTTTTTCCCCAGCAGCAGACCTTGGGACCTGTGAGCGCTGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAGGTGAGGACTCTGCCTGGGGCTCTGCTGATGGTTCCGAATCATGGAGCTGCAGAGAGCTCCTCCAGCCTGGAGACGTTCTTGGTGAAAGCTGTGGTCTAACTCCACCGGCTCTTCCTGCACATTGTATTCAAGAGGGGTGCCTGCCCCCGCTGACTCAGGAGCTCCGGTGCTGCAGCCGCCACGAATGGGGAGGTGGGCCCTCGATGTGGCCTTTTTGTGGAAGGCGGTGTTGACCCTGGGGCTGGTGCTTCTCTACTACTGCTTCTCCATCGGCATCACCTTCTACAACAAGTGGCTGACAAAG
Seq A exon
AGCTTCCATTTCCCCCTCTTCATGACGATGCTGCACCTGGCCGTGATCTTCCTCTTCTCCGCCCTGTCCAGGGCGCTGGTTCAGTGCTCCAGCCACAGGGCCCGTGTGGTGCTGAGCTGGGCCGACTACCTCAGAAGAGTGGCTCCCACAG
Seq C2 exon
CTCTGGCGACGGCGCTTGACGTGGGCTTGTCCAACTGGAGCTTCCTGTATGTCACCGTCTCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189_MULTIEX1-2/7=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=PU(19.9=72.5)
A:
PF0089215=EamA=FE(34.2=100)
C2:
PF0089215=EamA=FE(14.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAACTCCACCGGCTCTTCC
R:
ACAGGAAGCTCCAGTTGGACA
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)