GgaEX0026286 @ galGal3
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
NA
Coordinates
chr20:10679666-10681841:-
Coord C1 exon
chr20:10681687-10681841
Coord A exon
chr20:10681464-10681615
Coord C2 exon
chr20:10679666-10679729
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGCGGCTGTCGGTCCCGCAGAGC
3' ss Score
8.29
5' ss Seq
CAGGTCCGG
5' ss Score
4.73
Exon sequences
Seq C1 exon
CGGCGCTGTTCCTCGCGGCGCTCCGCGGGGCCCCGGGCGGGCGCATGGGGACGGGGGCGGCGGCGTTGGGCCGGGCGGCGTTGGTGGCGGCGCTGGTGCTGCTCTACTACGGCTTCTCCATCGGCATCACCTTCTACAACAAGTGGCTGATGAAG
Seq A exon
AGCTTCCCGTTCCCGCTGCTCGCCACGCTGCTGCACCTCCTGCTCATCTTCGCGCTGTCGGCGCTGTCCCGCGCCAAGGAGTTCCTACAACCACGAGCAGCAGCATCCATTACTGACCTCAATAGAGTGTAATCACCAGGCCGCGTCTGCAG
Seq C2 exon
CTTTGTCAACTTCCTTGGATATTGGGCTGAGTAACTGGAGCTTCCTGTATGTCACCGTCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=PU(10.8=37.8)
A:
PF0089215=EamA=FE(13.8=100)
C2:
PF0089215=EamA=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGGTGCTGCTCTACTA
R:
AGGGAGACGGTGACATACAGG
Band lengths:
130-282
Functional annotations
There are 0 annotated functions for this event