DreEX0073008 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51781485-51783884:-
Coord C1 exon
chr9:51783779-51783884
Coord A exon
chr9:51782202-51782363
Coord C2 exon
chr9:51781485-51781598
Length
162 bp
Sequences
Splice sites
3' ss Seq
AACCTATCATCTGCTTTCAGGAC
3' ss Score
8.77
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGTTCCTGTATTGAACCCGAAAACCCTAGTAATGCCACTCTGCAATATTGGGAGCAGAACAACATTTCAGCGCCAGAAATATTTTGGGAGGCTCTGGAAGTTGAG
Seq A exon
GACTGTATTGAGAAGAAAGGTGTATTTGTGGGGTCTGCTTGCGGGCCTCATGGTCCGTATGTTCCCGATGTTCTCTTCTGGTCTATCGTTCTCTTCTTCTCCACGGTCGCCATGTCTGCTTTTCTCAAAGAGTTCAAGACCAGCCGCTATTTTCCCACCAAG
Seq C2 exon
GTCAGATCCATCATCAGTGATTTTGCGGTGTTCATCACTATTGTCACTATGGTTCTGGTGGATTACGCTCTCGGGGTGCCTTCACCCAAACTGCAGGTCCCCAATGAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTATTGAACCCGAAAACCC
R:
GGACCTGCAGTTTGGGTGAAG
Band lengths:
202-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]