RnoEX6017039 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48243239-48248575:+
Coord C1 exon
chr3:48243239-48243344
Coord A exon
chr3:48246533-48246694
Coord C2 exon
chr3:48248462-48248575
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCCCTTCCTCTCAGGAG
3' ss Score
10.42
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGTAACTGTATGGAGCCACACAGTCCCAGCAATGACACACTGAAGGAGTGGCGCGAGTCCAACATTTCTGCCTCTGACATAATTTGGGGGAACCTAACTGTGTCA
Seq A exon
GAGTGCAGATCACTCCACGGGGAATATGTCGGGCGAGCCTGTGGCCATGGCCACCCGTATGTGCCGGACGTTCTCTTCTGGTCAGTGATCCTGTTCTTCTCCACAGTTACTATGTCAGCCACCCTGAAGCAGTTCAAGACCAGCCGGTATTTCCCCACTAAG
Seq C2 exon
GTTCGATCCATAGTGAGTGATTTTGCGGTTTTTCTTACAATTCTGTGTATGGTTTTAATTGACTATGCCATTGGGATCCCATCGCCAAAACTACAAGTACCAAGTGTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'28-35,'28-33,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACTGTATGGAGCCACACA
R:
CTTGAAAACACTTGGTACTTGTAGT
Band lengths:
220-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]