GgaEX1053549 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20696089-20699586:-
Coord C1 exon
chr7:20699481-20699586
Coord A exon
chr7:20696447-20696608
Coord C2 exon
chr7:20696089-20696202
Length
162 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTTCTCTCTGATAGGAA
3' ss Score
9.68
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATGCAATTGTGTGGAACCAGAGCATCCTAGCAATAAAACCTTACGATACTGGCAGGACTACAATATATCTGCATCTGATGTGCCATGGGGGAACCTAACTGTGTCA
Seq A exon
GAATGTAAAAAGTTTCATGGAGAATTTGTTGGACGAGCCTGTGGTCACCATGGCCCTTATGTTCCAGATGTCCTTTTCTGGTCTGTCATCTTATTCTTTTCTACAGTAACTCTGTCATCCACACTGAAGCAGTTCAAAACCAGCCGATACTTCCCAACAAAG
Seq C2 exon
GTACGATCTGTTGTCAGCGATTTTGCTGTCTTTCTCACTATTTTGTCCATGGTTTTAATTGACTATGCCATTGGGATCCCATCACCAAAACTTCAAGTTCCAAACGCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTGTGTGGAACCAGAGC
R:
CTTAAAAGCGTTTGGAACTTGAAGT
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]