DreEX0073438 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34929836-34931124:-
Coord C1 exon
chr22:34931053-34931124
Coord A exon
chr22:34930062-34930133
Coord C2 exon
chr22:34929836-34929907
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGCATTGTGTCCGATCTCAGACA
3' ss Score
5.32
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GGATTTGAGTGAAAATAACATCCAGATGATCCCAAGAAGAGCATTCAGAGGAGCTACAGACATCAAAAACCT
Seq A exon
ACAGCTGGATAAAAACCACATCAGCTGCATTGAAGACGGAGCGTTTCGAGCCATGAGGGTCCTGGAGGTCCT
Seq C2 exon
CACTCTGAACAACAACAACATCAGTGCAATCCCCATTTCCAGTTTTAACCACATGCCCAAATTACGAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446-'4-6,'4-4,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(6.6=16.7)
A:
PF138551=LRR_8=FE(37.7=100)
C2:
PF138551=LRR_8=FE(37.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTGAGTGAAAATAACATCCAGA
R:
ATGTTCGTAATTTGGGCATGTGG
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]