DreEX0074026 @ danRer10
Exon Skipping
Gene
ENSDARG00000099959 | smyhc1
Description
slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
Coordinates
chr24:40964779-40965717:-
Coord C1 exon
chr24:40965612-40965717
Coord A exon
chr24:40965411-40965503
Coord C2 exon
chr24:40964779-40964842
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATGTTAATGTTTGTTAATAGGGT
3' ss Score
7.62
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCTGGAAAGACTGTGAACACCAAGAGAGTCATTCAGTACTTTGCCAGCATCGCTGCCGTATCTGGGAAAAAAGATGCAGCTTCTGAGAAGAAG
Seq A exon
GGTACTCTGGAGGATCAAATCATCCAAGCTAACCCTGCTCTTGAGGCCTTTGGTAATGCCAAGACCATCAGAAATGACAACTCCTCCCGATTC
Seq C2 exon
GGTAAATTTATCCGAATTCACTTTGGTGTGAGTGGAAAACTGGCCTCAGCAGATATTGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099959-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCTGGTGCTGGAAA
R:
TTTCAATATCTGCTGAGGCCAGT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]