MmuEX6086312 @ mm10
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67330984-67334612:+
Coord C1 exon
chr11:67330984-67331095
Coord A exon
chr11:67332501-67332593
Coord C2 exon
chr11:67334549-67334612
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGACTTGTTACTAGGGA
3' ss Score
5.77
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGGAGAATCTGGGGCTGGAAAGACAGTGAACACGAAGCGTGTCATCCAATACTTTGCAACAATTGCAGTCACCGGGGACAAGAAGAAAGAGCAGCAGCCGGGCAAAATGCAG
Seq A exon
GGAACGCTGGAGGATCAGATCATCCAAGCCAACCCCCTGCTGGAGGCCTTTGGAAACGCCAAGACCGTGAGGAACGACAACTCCTCCAGATTT
Seq C2 exon
GGGAAGTTCATTCGGATCCACTTTGGAGCCACAGGGAAGCTAGCATCAGCGGACATCGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'1-18,'1-9,8-18=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGGCTGGAAAGACAGT
R:
AGGTTTCGATGTCCGCTGATG
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types