DreEX6023469 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40756637-40757285:-
Coord C1 exon
chr6:40757174-40757285
Coord A exon
chr6:40756803-40756895
Coord C2 exon
chr6:40756637-40756700
Length
93 bp
Sequences
Splice sites
3' ss Seq
CAACATTATGACTCAATTAGGGG
3' ss Score
1.94
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGAAAGACTGTAAACACCAAACGTGTCATCCAGTACTTTGCGACAATCGCTGTGGCTGGCAAGCAGAAGCAAGAGCCTATTCCTGGAAAAATGCAG
Seq A exon
GGGTCGCTGGAGGATCAAATCATTGCAGCCAACCCCTTGCTGGAAGCCTATGGCAACGCCAAGACTGTGAGGAATGACAACTCTTCCCGCTTT
Seq C2 exon
GGTAAATTCATCCGAATTCATTTCGGCACCACTGGAAAACTGGCCTCGGCTGATATTGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCTGGTGCAGGAAA
R:
TCAATATCAGCCGAGGCCAGT
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]