HsaEX6020964 @ hg38
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10355084-10360071:-
Coord C1 exon
chr17:10359960-10360071
Coord A exon
chr17:10357735-10357827
Coord C2 exon
chr17:10355084-10355147
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTGTTTATTATTAGGGA
3' ss Score
8.65
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCTGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTATTTTGCAACAATTGCAGTTACCGGGGACAAGAAGAAGGAGACACAGCCAGGCAAAATGCAG
Seq A exon
GGAACCCTAGAGGATCAGATCATCCAGGCCAACCCACTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCAAGATTT
Seq C2 exon
GGGAAGTTCATTCGGATTCATTTTGGAGCCACAGGAAAGCTGGCATCGGCAGACATCGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'5-8,'5-7,7-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCAGTCTATCCTCATCAC
R:
ACACCTTTTAATTGTAACTGGTTGGA
Band lengths:
103-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains